--- title: Spreadsheet Processing in Mathematica sidebar_label: Mathematica description: Build complex data pipelines in Mathematica Notebooks. Seamlessly create datasets with SheetJS. Leverage the Mathematica ecosystem to analyze data from Excel workbooks. pagination_prev: demos/cloud/index pagination_next: demos/bigdata/index sidebar_custom_props: summary: Generate Mathematica-compatible CSVs from arbitrary workbooks --- import current from '/version.js'; import Tabs from '@theme/Tabs'; import TabItem from '@theme/TabItem'; import CodeBlock from '@theme/CodeBlock'; [Mathematica](https://mathematica.com) is a software system for mathematics and scientific computing. It supports command-line tools and JavaScript extensions. [SheetJS](https://sheetjs.com) is a JavaScript library for reading and writing data from spreadsheets. This demo uses SheetJS to pull data from a spreadsheet for further analysis within Mathematica. We'll explore how to run an external tool to generate CSV data from opaque spreadsheets and parse the data from Mathematica. :::note Tested Deployments This demo was last tested by SheetJS users on 2023 November 04 in Mathematica 13. ::: ## Integration Details The [SheetJS NodeJS module](/docs/getting-started/installation/nodejs) can be loaded in NodeJS scripts, including scripts invoked using the `"NodeJS"` mode of the `ExternalEvaluate`[^1] Mathematica function. However, the current cross-platform recommendation involves a dedicated command line tool that leverages SheetJS libraries to to perform spreadsheet processing. ### External Engines The following diagram depicts the workbook waltz: ```mermaid flowchart LR subgraph `ExternalEvaluate` file[(workbook\nfile)] csvstr(CSV\nString) end data[(Dataset)] file --> |NodeJS\nSheetJS Ops| csvstr csvstr --> |ImportString\nMathematica| data ``` _Mathematica_ NodeJS can be activated from Mathematica using `RegisterExternalEvaluator`[^2]. Once activated, JavaScript code can be run using `ExternalEvaluate`[^3]. If the NodeJS code returns CSV data, `ImportString`[^4] can generate a `Dataset`[^5]. _SheetJS_ For a file residing on the filesystem, the SheetJS `readFile` function[^6] can generate a workbook object. The exact location can be determined by printing `require("process").cwd()`[^7] in `ExternalEvaluate`: ```mathematica In[1]:= ExternalEvaluate["NodeJS", "require('process').cwd()"] Out[1]= "C:\Users\Me\Documents" ``` After pulling the first worksheet[^8], the SheetJS `sheet_to_csv` function[^9] generates a CSV string. _Complete Function_ The following function reads a file, parses the first worksheet and returns a Dataset object assuming one header row. ```mathematica title="Complete Function" (* Import file stored in the Documents folder (e.g. C:\Users\Me\Documents) *) SheetJSImportFileEE[filename_]:=Module[{csv}, ( (* This was required in local testing *) RegisterExternalEvaluator["NodeJS","/usr/local/bin/node"]; (* Generate CSV from first sheet *) csv:=ExternalEvaluate["NodeJS", StringJoin[ (* module installed in home directory *) "var XLSX = require('xlsx');", (* read specified filename *) "var wb = XLSX.readFile('",filename,"');", (* grab first worksheet *) "var ws = wb.Sheets[wb.SheetNames[0]];", (* convert to CSV *) "XLSX.utils.sheet_to_csv(ws)" ]]; (* Parse CSV into a dataset *) Return[ImportString[csv, "Dataset", "HeaderLines"->1]]; )] ``` ```mathematica title="Complete Function" (* Import file stored in the Documents folder (e.g. C:\Users\Me\Documents) *) SheetJSImportFileEE[filename_]:=Module[{csv}, ( (* This was required in local testing *) RegisterExternalEvaluator["NodeJS","C:\\Program Files\\nodejs\\node.exe"]; (* Generate CSV from first sheet *) csv:=ExternalEvaluate["NodeJS", StringJoin[ (* module installed in home directory *) "var XLSX = require('xlsx');", (* read specified filename *) "var wb = XLSX.readFile('",filename,"');", (* grab first worksheet *) "var ws = wb.Sheets[wb.SheetNames[0]];", (* convert to CSV *) "XLSX.utils.sheet_to_csv(ws)" ]]; (* Parse CSV into a dataset *) Return[ImportString[csv, "Dataset", "HeaderLines"->1]]; )] ```
How to run the example (click to hide) :::note Tested Deployments This example was last tested on 2023 November 04 with Mathematica 13.3. ::: 0) Install NodeJS. When the demo was tested, version `20.9.0` was installed. 1) Install dependencies in the Home folder (`~` or `$HOME` or `%HOMEPATH%`): {`\ npm i --save https://cdn.sheetjs.com/xlsx-${current}/xlsx-${current}.tgz zeromq@6.0.0-beta.17`} 2) Open a new Mathematica Notebook and register NodeJS. When the example was tested in Windows, the commands were: ```mathematica RegisterExternalEvaluator["NodeJS","/usr/local/bin/node"] FindExternalEvaluators["NodeJS"] ``` ```mathematica RegisterExternalEvaluator["NodeJS","C:\\Program Files\\nodejs\\node.exe"] FindExternalEvaluators["NodeJS"] ``` The second argument to `RegisterExternalEvaluator` should be the path to the `node` or `node.exe` binary. If NodeJS is registered, the value in the "Registered" column will be "True". 4) To determine the base folder, run `require("process").cwd()` from NodeJS: ```mathematica ExternalEvaluate["NodeJS", "require('process').cwd()"] ``` 5) Download [`pres.numbers`](https://docs.sheetjs.com/pres.numbers) and move the file to the base folder as shown in the previous step. 6) Copy and evaluate the "Complete Function" in the previous codeblock. 7) Run the function and confirm the result is a proper Dataset: ```mathematica SheetJSImportFileEE["pres.numbers"] ``` ![SheetJSImportFileEE result](pathname:///mathematica/SheetJSImportFileEE.png)
### Command-Line Tools The ["Command-Line Tools" demo](/docs/demos/cli) creates `xlsx-cli`, a command-line tool that reads a spreadsheet file and generates CSV rows from the first worksheet. `ExternalEvaluate`[^10] can run command-line tools and capture standard output. The following snippet processes `~/Downloads/pres.numbers` and pulls CSV data into a variable in Mathematica: ```mathematica cmd = "/usr/local/bin/xlsx-cli ~/Downloads/pres.numbers" csvdata = ExternalEvaluate["Shell" -> "StandardOutput", cmd]; ``` `ImportString`[^11] can interpret the CSV data as a `Dataset`[^12]. Typically the first row of the CSV output is the header row. The `HeaderLines`[^13] option controls how Mathematica parses the data: ```mathematica data = ImportString[csvdata, "Dataset", "HeaderLines" -> 1] ``` The following diagram depicts the workbook waltz: ```mermaid flowchart LR subgraph `ExternalEvaluate` file[(workbook\nfile)] csvstr(CSV\nString) end data[(Dataset)] file --> |`xlsx-cli`\nSheetJS Ops| csvstr csvstr --> |ImportString\nMathematica| data ``` ## Complete Demo 1) Create the standalone `xlsx-cli` binary[^14]: {`\ npm i --save https://cdn.sheetjs.com/xlsx-${current}/xlsx-${current}.tgz exit-on-epipe commander@2 curl -LO https://docs.sheetjs.com/cli/xlsx-cli.js npx nexe -t 14.15.3 xlsx-cli.js`} 2) Move the generated `xlsx-cli` to a fixed location in `/usr/local/bin`: ```bash mkdir -p /usr/local/bin mv xlsx-cli /usr/local/bin/ ``` 2) Find the current directory: ```bash cd ``` The generated binary will be `xlsx-cli.exe` in the displayed path. ### Reading a Local File 3) In a new Mathematica notebook, run the following snippet: ```mathematica SheetJSImportFile[x_] := ImportString[Block[{Print}, ExternalEvaluate[ "Shell" -> "StandardOutput", // highlight-next-line "/usr/local/bin/xlsx-cli " <> x ]], "Dataset", "HeaderLines" -> 1] ``` Change `/usr/local/bin/xlsx-cli` in the string to the path to the generated `xlsx-cli.exe` binary. For example, if the path in step 2 was `C:\Users\Me\Documents\`, then the code should be: ```mathematica SheetJSImportFile[x_] := ImportString[Block[{Print}, ExternalEvaluate[ "Shell" -> "StandardOutput", // highlight-next-line "C:\\Users\\Me\\Documents\\xlsx-cli.exe " <> x ]], "Dataset", "HeaderLines" -> 1] ``` The `\` characters must be doubled. 4) Download https://docs.sheetjs.com/pres.numbers and save to Downloads folder: ```bash cd ~/Downloads/ curl -LO https://docs.sheetjs.com/pres.numbers ``` 5) In the Mathematica notebook, run the new function. If the file was saved to the Downloads folder, the path will be `"~/Downloads/pres.numbers"` in macOS: ```mathematica data = SheetJSImportFile["~/Downloads/pres.numbers"] ``` The result should be displayed in a concise table. ![SheetJSImportFile result](pathname:///mathematica/SheetJSImportFile.png) ### Reading from a URL `FetchURL`[^15] downloads a file from a specified URL and returns a path to the file. This function will be wrapped in a new function called `SheetJSImportURL`. 6) In the same notebook, run the following: ```mathematica Needs["Utilities`URLTools`"]; SheetJSImportURL[x_] := Module[{path},( path = FetchURL[x]; SheetJSImportFile[path] )]; ``` 7) Test by downloading the test file in the notebook: ```mathematica data = SheetJSImportURL["https://docs.sheetjs.com/pres.numbers"] ``` ![SheetJSImportURL result](pathname:///mathematica/SheetJSImportURL.png) [^1]: See [the `ExternalEvaluate` Node.js example](https://reference.wolfram.com/language/ref/ExternalEvaluate.html#:~:text=Evaluate%20a%20basic%20math%20function%20in%20JavaScript%20using%20Node.js%3A) in the Mathematica documentation. [^2]: See [`RegisterExternalEvaluator`](https://reference.wolfram.com/language/ref/RegisterExternalEvaluator.html) in the Mathematica documentation. [^3]: See [`ExternalEvaluate`](https://reference.wolfram.com/language/ref/ExternalEvaluate.html) in the Mathematica documentation. [^4]: See [`ImportString`](https://reference.wolfram.com/language/ref/ImportString.html) in the Mathematica documentation. [^5]: A [`Dataset`](https://reference.wolfram.com/language/ref/Dataset.html) will be created when using the [`"Dataset"` element in `ImportString`](https://reference.wolfram.com/language/ref/format/CSV.html) [^6]: See [`readFile` in "Reading Files"](/docs/api/parse-options) [^7]: See [`process.cwd()`](https://nodejs.org/api/process.html#processcwd) in the NodeJS documentation. [^8]: The `Sheets` and `SheetNames` properties of workbook objects are described in ["Workbook Object"](/docs/csf/book) [^9]: See [`sheet_to_csv` in "CSV and Text"](/docs/api/utilities/csv#delimiter-separated-output) [^10]: See [`ExternalEvaluate`](https://reference.wolfram.com/language/ref/ExternalEvaluate.html) in the Mathematica documentation. [^11]: See [`ImportString`](https://reference.wolfram.com/language/ref/ImportString.html) in the Mathematica documentation. [^12]: A [`Dataset`](https://reference.wolfram.com/language/ref/Dataset.html) will be created when using the [`"Dataset"` element in `ImportString`](https://reference.wolfram.com/language/ref/format/CSV.html) [^13]: See [`HeaderLines`](https://reference.wolfram.com/language/ref/HeaderLines.html) in the Mathematica documentation. [^14]: See ["Command-line Tools"](/docs/demos/cli) for more details. [^15]: Mathematica 11 introduced new methods including [`URLRead`](https://reference.wolfram.com/language/ref/URLRead.html).